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Resources

Useful research tools

SGD (Saccharomyces Genome Database)

The Saccharomyces Genome Database (SGD) provides comprehensive integrated biological information for the budding yeast Saccharomyces cerevisiae along with search and analysis tools to explore these data, enabling the discovery of functional relationships between sequence and gene products in fungi and higher organisms.

Access Database

MetaboAnalyst

MetaboAnalyst is a set of online tools for metabolomic data analysis and interpretation, created by members of the Wishart Research Group at the University of Alberta.

Perform Analysis

KEGG

KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.

access database

YMDB (Yeast Metabolome Database)

The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. YMDB contains metabolites arising from normal S. cerevisiae metabolism under defined laboratory conditions as well as metabolites generated by S. cerevisiae when used in baking and in the production of wines, beers and spirits

access database

NCBI (National Center for Biotechnology Information)

The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.

access resource

ASBC (American Society of Brewing Chemists) Methods of Analysis

The ASBC is a professional organization of scientists and technical professionals in the brewing, malting, and allied industries.

Find out more

Shared Proteomics

SharedProteomics is an online proteomics community for sharing protocols, papers, news, questions, and more regarding the field of proteomic research.

Find out more

Image J

ImageJ is an open source image processing program designed for scientific multidimensional images. ImageJ is highly extensible, with thousands of plugins and scripts for performing a wide variety of tasks, and a large user community.

access software

ApE (A Plasmid Editor)

This free software tool allows a user to perform various tasks on plasmid sequence.

access software

Oligonucleotide Analysis Tools (Eurofins)

Analyze the properties of oligonucleotides such as sequence and melting temperature. This site also has tools to help with PCR design, qPCR design, and more.

perform analysis

MEGA (Molecular Evoluntionary Genetics Analysis)

The Molecular Evolutionary Genetics Analysis (MEGA) software is a desktop application designed for comparative analysis of homologous gene sequences either from multigene families or from different species with a special emphasis on inferring evolutionary relationships and patterns of DNA and protein evolution. In addition to the tools for statistical analysis of data, MEGA provides many convenient facilities for the assembly of sequence data sets from files or web-based repositories, and it includes tools for visual presentation of the results obtained in the form of interactive phylogenetic trees and evolutionary distance matrices.

access software

Literature

Recommended readings

Budding Yeast for Budding Geneticists: A Primer on the Saccharomyces cerevisiae Model System

Budding Yeast for Budding Geneticists: A Primer on the Saccharomyces cerevisiae Model System

Budding Yeast for Budding Geneticists: A Primer on the Saccharomyces cerevisiae Model System

Andrea A. Duina, Mary E. Miller & Jill B. Keeney, 2014

Free Article

Yeast: An Experimental Organism for 21st Century Biology

Budding Yeast for Budding Geneticists: A Primer on the Saccharomyces cerevisiae Model System

Budding Yeast for Budding Geneticists: A Primer on the Saccharomyces cerevisiae Model System

David Botstein & Gerald R. Fink, 2011

Free Article

The fascinating and secret wild life of the budding yeast S. cerevisiae

Budding Yeast for Budding Geneticists: A Primer on the Saccharomyces cerevisiae Model System

The fascinating and secret wild life of the budding yeast S. cerevisiae

Gianni Liti, 2015

Free Article

Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina)

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources...

The fascinating and secret wild life of the budding yeast S. cerevisiae

Bernard A. Dujon & Edward J. Louis, 2017

free article

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources...

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources...

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources...

Devin R. Scannell, Oliver A. Zill, Antonis Rokas, Celia Payen, Maitreya J. Dunham, Michael B. Eisen, Jasper Rine, Mark Johnston & Chris Todd Hittinger, 2011

Free article

Yeast as a Model Organism

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources...

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources...

David Botstein, Steven A. Chervitz, & J. Michael Cherry, 1997

Free Article

Saccharomyces diversity and evolution: a budding model genus

Brewing Microbiology: Current Research, Omics, and Microbial Ecology

Brewing Microbiology: Current Research, Omics, and Microbial Ecology

Chris Todd Hittinger, 2013

Find out more

Brewing Microbiology: Current Research, Omics, and Microbial Ecology

Brewing Microbiology: Current Research, Omics, and Microbial Ecology

Brewing Microbiology: Current Research, Omics, and Microbial Ecology

Nicholas A. Bokulich & Charles W. Bamforth, 2017

Find out more

At the Bench: A Laboratory Navigator

Brewing Microbiology: Current Research, Omics, and Microbial Ecology

At the Bench: A Laboratory Navigator

Kathy Barker, 2005

Find out more

Yeast evolutionary genomics

Yeast evolutionary genomics

At the Bench: A Laboratory Navigator

Bernard Dujon , 2010

Find out more

Yeast Idiosyncrasies

Yeast evolutionary genomics

Yeast Idiosyncrasies

Cora Styles (Fink Lab)

Get List

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